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Resource CodeSystem/FHIR Server from package de.bbmri.fhir#1.2.0 (344 ms)

Package de.bbmri.fhir
Type CodeSystem
Id Id
FHIR Version R4
Source https://simplifier.net/resolve?scope=de.bbmri.fhir@1.2.0&canonical=https://fhir.bbmri.de/CodeSystem/SampleMaterialType
Url https://fhir.bbmri.de/CodeSystem/SampleMaterialType
Version 1.1.0
Status active
Date 2020-05-28T14:12:37+00:00
Name SampleMaterialType
Title Sample Material Type
Experimental False
Description The type of material the sample consists of.
Content complete

Resources that use this resource

ValueSet
https://fhir.bbmri.de/ValueSet/SampleMaterialType Sample Material Type

Resources that this resource uses

No resources found

Narrative

Note: links and images are rebased to the (stated) source

This code system https://fhir.bbmri.de/CodeSystem/SampleMaterialType defines the following codes:

LvlCodeDisplayDefinition
1whole-blood Whole blood
1bone-marrow Bone marrow
1buffy-coat Buffy-Coat
1dried-whole-blood Dried whole blood
1peripheral-blood-cells-vital Peripheral blood mononuclear cells (PBMCs, viable)
1blood-plasma Plasma
2  plasma-edta Plasma, EDTA
2  plasma-citrat Plasma, Citrat
2  plasma-heparin Plasma, Heparin
2  plasma-cell-free Plasma, cell free
2  plasma-other Plasma, other
1blood-serum Serum
1ascites Ascites
1csf-liquor CSF/Liquor
1saliva Saliva
1stool-faeces Stool/Faeces
1urine Urine
1swab Swab
1liquid-other Other liquid biosample/storage
1tissue-ffpe Tissue FFPE
2  tumor-tissue-ffpe Tumor tissue (FFPE)
2  normal-tissue-ffpe Normal tissue (FFPE)
2  other-tissue-ffpe Other tissue (FFPE)
1tissue-frozen Tissue frozen
2  tumor-tissue-frozen Tumor tissue (frozen)
2  normal-tissue-frozen Normal tissue (frozen)
2  other-tissue-frozen Other tissue (frozen)
1tissue-other Other tissue storage
1dna DNA
2  cf-dna cfDNA
2  g-dna gDNA
1rna RNA
1derivative-other Other derivative

Source

{
  "resourceType" : "CodeSystem",
  "id" : "SampleMaterialType",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system https://fhir.bbmri.de/CodeSystem/SampleMaterialType defines the following codes:</p><table class=\"codes\"><tr><td><b>Lvl</b></td><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td>1</td><td style=\"white-space:nowrap\">whole-blood<a name=\"SampleMaterialType-whole-blood\"> </a></td><td>Whole blood</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">bone-marrow<a name=\"SampleMaterialType-bone-marrow\"> </a></td><td>Bone marrow</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">buffy-coat<a name=\"SampleMaterialType-buffy-coat\"> </a></td><td>Buffy-Coat</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">dried-whole-blood<a name=\"SampleMaterialType-dried-whole-blood\"> </a></td><td>Dried whole blood</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">peripheral-blood-cells-vital<a name=\"SampleMaterialType-peripheral-blood-cells-vital\"> </a></td><td>Peripheral blood mononuclear cells (PBMCs, viable)</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">blood-plasma<a name=\"SampleMaterialType-blood-plasma\"> </a></td><td>Plasma</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  plasma-edta<a name=\"SampleMaterialType-plasma-edta\"> </a></td><td>Plasma, EDTA</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  plasma-citrat<a name=\"SampleMaterialType-plasma-citrat\"> </a></td><td>Plasma, Citrat</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  plasma-heparin<a name=\"SampleMaterialType-plasma-heparin\"> </a></td><td>Plasma, Heparin</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  plasma-cell-free<a name=\"SampleMaterialType-plasma-cell-free\"> </a></td><td>Plasma, cell free</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  plasma-other<a name=\"SampleMaterialType-plasma-other\"> </a></td><td>Plasma, other</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">blood-serum<a name=\"SampleMaterialType-blood-serum\"> </a></td><td>Serum</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">ascites<a name=\"SampleMaterialType-ascites\"> </a></td><td>Ascites</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">csf-liquor<a name=\"SampleMaterialType-csf-liquor\"> </a></td><td>CSF/Liquor</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">saliva<a name=\"SampleMaterialType-saliva\"> </a></td><td>Saliva</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">stool-faeces<a name=\"SampleMaterialType-stool-faeces\"> </a></td><td>Stool/Faeces</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">urine<a name=\"SampleMaterialType-urine\"> </a></td><td>Urine</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">swab<a name=\"SampleMaterialType-swab\"> </a></td><td>Swab</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">liquid-other<a name=\"SampleMaterialType-liquid-other\"> </a></td><td>Other liquid biosample/storage</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">tissue-ffpe<a name=\"SampleMaterialType-tissue-ffpe\"> </a></td><td>Tissue FFPE</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  tumor-tissue-ffpe<a name=\"SampleMaterialType-tumor-tissue-ffpe\"> </a></td><td>Tumor tissue (FFPE)</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  normal-tissue-ffpe<a name=\"SampleMaterialType-normal-tissue-ffpe\"> </a></td><td>Normal tissue (FFPE)</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  other-tissue-ffpe<a name=\"SampleMaterialType-other-tissue-ffpe\"> </a></td><td>Other tissue (FFPE)</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">tissue-frozen<a name=\"SampleMaterialType-tissue-frozen\"> </a></td><td>Tissue frozen</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  tumor-tissue-frozen<a name=\"SampleMaterialType-tumor-tissue-frozen\"> </a></td><td>Tumor tissue (frozen)</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  normal-tissue-frozen<a name=\"SampleMaterialType-normal-tissue-frozen\"> </a></td><td>Normal tissue (frozen)</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  other-tissue-frozen<a name=\"SampleMaterialType-other-tissue-frozen\"> </a></td><td>Other tissue (frozen)</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">tissue-other<a name=\"SampleMaterialType-tissue-other\"> </a></td><td>Other tissue storage</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">dna<a name=\"SampleMaterialType-dna\"> </a></td><td>DNA</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  cf-dna<a name=\"SampleMaterialType-cf-dna\"> </a></td><td>cfDNA</td><td/></tr><tr><td>2</td><td style=\"white-space:nowrap\">  g-dna<a name=\"SampleMaterialType-g-dna\"> </a></td><td>gDNA</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">rna<a name=\"SampleMaterialType-rna\"> </a></td><td>RNA</td><td/></tr><tr><td>1</td><td style=\"white-space:nowrap\">derivative-other<a name=\"SampleMaterialType-derivative-other\"> </a></td><td>Other derivative</td><td/></tr></table></div>"
  },
  "url" : "https://fhir.bbmri.de/CodeSystem/SampleMaterialType",
  "version" : "1.1.0",
  "name" : "SampleMaterialType",
  "title" : "Sample Material Type",
  "status" : "active",
  "date" : "2020-05-28T14:12:37+00:00",
  "publisher" : "BBMRI.de",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.bbmri.de"
        },
        {
          "system" : "email",
          "value" : "feedback@germanbiobanknode.de"
        }
      ]
    }
  ],
  "description" : "The type of material the sample consists of.",
  "hierarchyMeaning" : "is-a",
  "compositional" : false,
  "content" : "complete",
  "concept" : [
    {
      "code" : "whole-blood",
      "display" : "Whole blood"
    },
    {
      "code" : "bone-marrow",
      "display" : "Bone marrow"
    },
    {
      "code" : "buffy-coat",
      "display" : "Buffy-Coat"
    },
    {
      "code" : "dried-whole-blood",
      "display" : "Dried whole blood"
    },
    {
      "code" : "peripheral-blood-cells-vital",
      "display" : "Peripheral blood mononuclear cells (PBMCs, viable)"
    },
    {
      "code" : "blood-plasma",
      "display" : "Plasma",
      "concept" : [
        {
          "code" : "plasma-edta",
          "display" : "Plasma, EDTA"
        },
        {
          "code" : "plasma-citrat",
          "display" : "Plasma, Citrat"
        },
        {
          "code" : "plasma-heparin",
          "display" : "Plasma, Heparin"
        },
        {
          "code" : "plasma-cell-free",
          "display" : "Plasma, cell free"
        },
        {
          "code" : "plasma-other",
          "display" : "Plasma, other"
        }
      ]
    },
    {
      "code" : "blood-serum",
      "display" : "Serum"
    },
    {
      "code" : "ascites",
      "display" : "Ascites"
    },
    {
      "code" : "csf-liquor",
      "display" : "CSF/Liquor"
    },
    {
      "code" : "saliva",
      "display" : "Saliva"
    },
    {
      "code" : "stool-faeces",
      "display" : "Stool/Faeces"
    },
    {
      "code" : "urine",
      "display" : "Urine"
    },
    {
      "code" : "swab",
      "display" : "Swab"
    },
    {
      "code" : "liquid-other",
      "display" : "Other liquid biosample/storage"
    },
    {
      "code" : "tissue-ffpe",
      "display" : "Tissue FFPE",
      "concept" : [
        {
          "code" : "tumor-tissue-ffpe",
          "display" : "Tumor tissue (FFPE)"
        },
        {
          "code" : "normal-tissue-ffpe",
          "display" : "Normal tissue (FFPE)"
        },
        {
          "code" : "other-tissue-ffpe",
          "display" : "Other tissue (FFPE)"
        }
      ]
    },
    {
      "code" : "tissue-frozen",
      "display" : "Tissue frozen",
      "concept" : [
        {
          "code" : "tumor-tissue-frozen",
          "display" : "Tumor tissue (frozen)"
        },
        {
          "code" : "normal-tissue-frozen",
          "display" : "Normal tissue (frozen)"
        },
        {
          "code" : "other-tissue-frozen",
          "display" : "Other tissue (frozen)"
        }
      ]
    },
    {
      "code" : "tissue-other",
      "display" : "Other tissue storage"
    },
    {
      "code" : "dna",
      "display" : "DNA",
      "concept" : [
        {
          "code" : "cf-dna",
          "display" : "cfDNA"
        },
        {
          "code" : "g-dna",
          "display" : "gDNA"
        }
      ]
    },
    {
      "code" : "rna",
      "display" : "RNA"
    },
    {
      "code" : "derivative-other",
      "display" : "Other derivative"
    }
  ]
}

XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.